Current tasks:
Search algorithms:
KMP
Suffix arrays (Victor)- K-mers (Andrew)
- Compressed Suffix arrays (Victor)
- BLAST
- Inexact search
Annotations are used to get more precised location: (Kate) in progress
- search in genes
- protein id
- repeats
- locuses
- exons & introns
Parser
- inexact search syntax
- regular expressions
- on the fly error checking
parsing on client side- sytax for search by shift before/after gene
TODO:
- Use issue tracker!
- on the fly syntax check client side with better error recovery
- task estimation time based on algorythm used
- better instant input validation
- ability to stop long running tasks
- think about result layout
- improve help layout: see current right side help
- show sample queries on startup page
- HISTORY of queries
Legend
- Must have feature
- Nice to have feature
- Under Investigation
- In Progress
- Feature Implemented