Page History

Current tasks:

Search algorithms:

• KMP
• Suffix arrays (Victor)
• K-mers (Andrew)
• Compressed Suffix arrays (Victor)
• BLAST (Vlad)
• Inexact search

Annotations are used to get more precised location: (Kate) in progress

• search in genes
• protein id
• repeats
• locuses
• exons & introns

Parser

• inexact search syntax
• regular expressions
• on the fly error checking
• parsing on client side
• sytax for search by shift before/after gene

TODO:

• Use issue tracker!
• on the fly syntax check client side with better error recovery
• task estimation time based on algorythm used
• better instant input validation
• ability to stop long running tasks
• think about result layout
• improve help layout: see current right side help
• show sample queries on startup page
• HISTORY of queries